About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent~1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70%35,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g11799
Clavulariidae_g118HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN U FAMILY MEMBER
Clavulariidae_g1180
Clavulariidae_g11800
Clavulariidae_g11801
Clavulariidae_g11802
Clavulariidae_g11803
Clavulariidae_g11804
Clavulariidae_g11805REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g11806OSJNBA0013A04.12 PROTEIN
Clavulariidae_g11807
Clavulariidae_g11808
Clavulariidae_g11809
Clavulariidae_g1181
Clavulariidae_g11810
Clavulariidae_g11811DNA HELICASE RECQ FAMILY MEMBER
Clavulariidae_g11812
Clavulariidae_g11813EXPRESSED PROTEIN
Clavulariidae_g11814
Clavulariidae_g11815DNA POLYMERASE
Clavulariidae_g11816EXPRESSED PROTEIN
Clavulariidae_g11817
Clavulariidae_g11818CXC DOMAIN-CONTAINING PROTEIN-RELATED
Clavulariidae_g11819
Clavulariidae_g1182
Clavulariidae_g11820
Clavulariidae_g11821EXPRESSED PROTEIN
Clavulariidae_g11822TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
Clavulariidae_g11823
Clavulariidae_g11824REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g11825
Clavulariidae_g11826
Clavulariidae_g11827
Clavulariidae_g11828DNA HELICASE RECQ FAMILY MEMBER
Clavulariidae_g11829ATP-DEPENDENT DNA HELICASE
Clavulariidae_g1183
Clavulariidae_g11830
Clavulariidae_g11831
Clavulariidae_g11832PHD-TYPE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g11833
Clavulariidae_g11834
Clavulariidae_g11835DNA REPLICATION-RELATED ELEMENT FACTOR, ISOFORM A
Clavulariidae_g11836
Clavulariidae_g11837RETROTRANSPOSON
Clavulariidae_g11838C2H2-TYPE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g11839PROTEIN CBG26694
Clavulariidae_g1184
Clavulariidae_g11840PROTEIN CBG26694
Clavulariidae_g11841PROTEIN CBG26694
Clavulariidae_g11842-
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