About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent~1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70%35,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g11979
Clavulariidae_g1198ADHESION G-PROTEIN COUPLED RECEPTOR
Clavulariidae_g11980
Clavulariidae_g11981
Clavulariidae_g11982SI:CH211-108C17.2-RELATED-RELATED
Clavulariidae_g11983
Clavulariidae_g11984
Clavulariidae_g11985
Clavulariidae_g11986
Clavulariidae_g11987CXC DOMAIN-CONTAINING PROTEIN-RELATED
Clavulariidae_g11988L1 TRANSPOSABLE ELEMENT-RELATED
Clavulariidae_g11989
Clavulariidae_g1199
Clavulariidae_g11990PROTEIN CBG26694
Clavulariidae_g11991
Clavulariidae_g11992
Clavulariidae_g11993PROTEIN CBG26694
Clavulariidae_g11994INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN
Clavulariidae_g11995PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g11996
Clavulariidae_g11997SI:CH211-108C17.2-RELATED-RELATED
Clavulariidae_g11998INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN
Clavulariidae_g11999
Clavulariidae_g12SYNAPTOTAGMIN
Clavulariidae_g120HEDGEHOG
Clavulariidae_g1200
Clavulariidae_g12000REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g12001
Clavulariidae_g12002TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
Clavulariidae_g12003REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g12004ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g12005SORTING NEXIN
Clavulariidae_g12006
Clavulariidae_g12007PROTEIN CBG26694
Clavulariidae_g12008REVERSE TRANSCRIPTASES
Clavulariidae_g12009
Clavulariidae_g1201MULTICOPPER OXIDASE-RELATED
Clavulariidae_g12010
Clavulariidae_g12011REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g12012ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g12013TYROSINE SPECIFIC PROTEIN PHOSPHATASE AND DUAL SPECIFICITY PROTEIN PHOSPHATASE
Clavulariidae_g12014PROTEASOME INHIBITOR
Clavulariidae_g12015COLLAGEN ALPHA
Clavulariidae_g12016COLLAGEN ALPHA
Clavulariidae_g12017UNCHARACTERIZED
Clavulariidae_g12018HYR DOMAIN-CONTAINING PROTEIN
Clavulariidae_g12019INTERFERON-INDUCIBLE GTPASE
Clavulariidae_g1202TRANSCRIPTION INITIATION FACTOR TFIID
Clavulariidae_g12020COLLAGEN ALPHA
Clavulariidae_g12021GLIAL CELLS MISSING RELATED/GLIDE
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