Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Trachythela sp. YZ-2020 | Cnidaria | Trachythela sp., Cold-water corals (CWCs) | Cold seep/Hydrothermal vent | ~1068 | slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS) | 2770514 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
IDSSE_Tra_sp_1.0 | 578.2Mb | Contig | 2020 | JADLSH01 | Institute of Deep-Sea Science and Engineering,Chinese Academy of Sciences | PRJNA661975 | 90.70% | 35,305 |
Title | Journal | Pubmed ID |
---|---|---|
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae) | Genome Biology and Evolution | 33331875 |
Gene ID | Description |
---|---|
Clavulariidae_g11979 | |
Clavulariidae_g1198 | ADHESION G-PROTEIN COUPLED RECEPTOR |
Clavulariidae_g11980 | |
Clavulariidae_g11981 | |
Clavulariidae_g11982 | SI:CH211-108C17.2-RELATED-RELATED |
Clavulariidae_g11983 | |
Clavulariidae_g11984 | |
Clavulariidae_g11985 | |
Clavulariidae_g11986 | |
Clavulariidae_g11987 | CXC DOMAIN-CONTAINING PROTEIN-RELATED |
Clavulariidae_g11988 | L1 TRANSPOSABLE ELEMENT-RELATED |
Clavulariidae_g11989 | |
Clavulariidae_g1199 | |
Clavulariidae_g11990 | PROTEIN CBG26694 |
Clavulariidae_g11991 | |
Clavulariidae_g11992 | |
Clavulariidae_g11993 | PROTEIN CBG26694 |
Clavulariidae_g11994 | INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g11995 | PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g11996 | |
Clavulariidae_g11997 | SI:CH211-108C17.2-RELATED-RELATED |
Clavulariidae_g11998 | INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g11999 | |
Clavulariidae_g12 | SYNAPTOTAGMIN |
Clavulariidae_g120 | HEDGEHOG |
Clavulariidae_g1200 | |
Clavulariidae_g12000 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g12001 | |
Clavulariidae_g12002 | TRANSCRIPTASE, PUTATIVE-RELATED-RELATED |
Clavulariidae_g12003 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g12004 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g12005 | SORTING NEXIN |
Clavulariidae_g12006 | |
Clavulariidae_g12007 | PROTEIN CBG26694 |
Clavulariidae_g12008 | REVERSE TRANSCRIPTASES |
Clavulariidae_g12009 | |
Clavulariidae_g1201 | MULTICOPPER OXIDASE-RELATED |
Clavulariidae_g12010 | |
Clavulariidae_g12011 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g12012 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g12013 | TYROSINE SPECIFIC PROTEIN PHOSPHATASE AND DUAL SPECIFICITY PROTEIN PHOSPHATASE |
Clavulariidae_g12014 | PROTEASOME INHIBITOR |
Clavulariidae_g12015 | COLLAGEN ALPHA |
Clavulariidae_g12016 | COLLAGEN ALPHA |
Clavulariidae_g12017 | UNCHARACTERIZED |
Clavulariidae_g12018 | HYR DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g12019 | INTERFERON-INDUCIBLE GTPASE |
Clavulariidae_g1202 | TRANSCRIPTION INITIATION FACTOR TFIID |
Clavulariidae_g12020 | COLLAGEN ALPHA |
Clavulariidae_g12021 | GLIAL CELLS MISSING RELATED/GLIDE |