About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent~1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70%35,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g11843
Clavulariidae_g11844SET DOMAIN-CONTAINING PROTEIN-RELATED
Clavulariidae_g11845
Clavulariidae_g11846PHD-TYPE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g11847RETROTRANSPOSON
Clavulariidae_g11848RETROTRANSPOSON
Clavulariidae_g11849
Clavulariidae_g1185
Clavulariidae_g11850INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN
Clavulariidae_g11851REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g11852PROTEIN, PUTATIVE-RELATED
Clavulariidae_g11853
Clavulariidae_g11854
Clavulariidae_g11855
Clavulariidae_g11856
Clavulariidae_g11857
Clavulariidae_g11858ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g11859RAS-ASSOCIATING DOMAIN-CONTAINING PROTEIN
Clavulariidae_g1186
Clavulariidae_g11860RAS-ASSOCIATING DOMAIN-CONTAINING PROTEIN
Clavulariidae_g11861ZINC FINGER BED DOMAIN-CONTAINING PROTEIN 4
Clavulariidae_g11862TRANSPOSABLE ELEMENT-RELATED
Clavulariidae_g11863
Clavulariidae_g11864PHD-TYPE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g11865PROTEIN CBG23806
Clavulariidae_g11866C2H2-TYPE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g11867
Clavulariidae_g11868SI:CH211-108C17.2-RELATED-RELATED
Clavulariidae_g11869INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED
Clavulariidae_g1187
Clavulariidae_g11870
Clavulariidae_g11871DNA HELICASE RECQ FAMILY MEMBER
Clavulariidae_g11872
Clavulariidae_g11873
Clavulariidae_g11874
Clavulariidae_g11875
Clavulariidae_g11876DNA HELICASE RECQ FAMILY MEMBER
Clavulariidae_g11877RAS-ASSOCIATING DOMAIN-CONTAINING PROTEIN
Clavulariidae_g11878
Clavulariidae_g11879
Clavulariidae_g1188TRANSPOSASE
Clavulariidae_g11880
Clavulariidae_g11881
Clavulariidae_g11882ATP-DEPENDENT DNA HELICASE
Clavulariidae_g11883PROTEIN CBG26694
Clavulariidae_g11884
Clavulariidae_g11885
Clavulariidae_g11886
Clavulariidae_g11887C2H2-TYPE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g11888EXPRESSED PROTEIN
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