About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent~1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70%35,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g11889
Clavulariidae_g1189
Clavulariidae_g11890EXPRESSED PROTEIN
Clavulariidae_g11891
Clavulariidae_g11892
Clavulariidae_g11893HAT FAMILY DIMERISATION DOMAINCONTAINING PROTEIN-RELATED
Clavulariidae_g11894
Clavulariidae_g11895
Clavulariidae_g11896ATP-DEPENDENT DNA HELICASE
Clavulariidae_g11897
Clavulariidae_g11898ZINC FINGER BED DOMAIN-CONTAINING PROTEIN 4
Clavulariidae_g11899
Clavulariidae_g119TRIMERIC INTRACELLULAR CATION CHANNEL
Clavulariidae_g1190PROTEIN CBG26694
Clavulariidae_g11900RETROTRANSPOSON
Clavulariidae_g11901
Clavulariidae_g11902ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g11903PROTEIN CBG23764
Clavulariidae_g11904HAT FAMILY DIMERISATION DOMAINCONTAINING PROTEIN-RELATED
Clavulariidae_g11905
Clavulariidae_g11906
Clavulariidae_g11907
Clavulariidae_g11908
Clavulariidae_g11909PHD-TYPE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g1191
Clavulariidae_g11910
Clavulariidae_g11911
Clavulariidae_g11912RETROTRANSPOSON
Clavulariidae_g11913HAT FAMILY DIMERISATION DOMAINCONTAINING PROTEIN-RELATED
Clavulariidae_g11914RETROTRANSPOSON
Clavulariidae_g11915CXC DOMAIN-CONTAINING PROTEIN-RELATED
Clavulariidae_g11916CXC DOMAIN-CONTAINING PROTEIN-RELATED
Clavulariidae_g11917PROTEIN, PUTATIVE-RELATED
Clavulariidae_g11918HMG DOMAIN-CONTAINING PROTEIN 3
Clavulariidae_g11919
Clavulariidae_g1192
Clavulariidae_g11920
Clavulariidae_g11921
Clavulariidae_g11922REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g11923RETROTRANSPOSON
Clavulariidae_g11924RETROTRANSPOSON
Clavulariidae_g11925RETROTRANSPOSON
Clavulariidae_g11926OVARIAN-SPECIFIC SERINE/THREONINE-PROTEIN KINASE LOK-RELATED
Clavulariidae_g11927
Clavulariidae_g11928ATP-DEPENDENT DNA HELICASE
Clavulariidae_g11929
Clavulariidae_g1193
Clavulariidae_g11930OSJNBA0013A04.12 PROTEIN
Clavulariidae_g11931THAP DOMAIN-CONTAINING PROTEIN 6
Clavulariidae_g11932HAT FAMILY DIMERISATION DOMAINCONTAINING PROTEIN-RELATED
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