About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent~1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70%35,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g11933SI:CH211-108C17.2-RELATED-RELATED
Clavulariidae_g11934ZGC:195170
Clavulariidae_g11935CXC DOMAIN-CONTAINING PROTEIN-RELATED
Clavulariidae_g11936REVERSE TRANSCRIPTASES
Clavulariidae_g11937
Clavulariidae_g11938
Clavulariidae_g11939THAP DOMAIN-CONTAINING PROTEIN 6
Clavulariidae_g1194REVERSE TRANSCRIPTASE
Clavulariidae_g11940UNCHARACTERIZED
Clavulariidae_g11941
Clavulariidae_g11942
Clavulariidae_g11943EXPRESSED PROTEIN
Clavulariidae_g11944HMG DOMAIN-CONTAINING PROTEIN 3
Clavulariidae_g11945
Clavulariidae_g11946REVERSE TRANSCRIPTASES
Clavulariidae_g11947
Clavulariidae_g11948
Clavulariidae_g11949PROTEIN CBG23764
Clavulariidae_g1195
Clavulariidae_g11950ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g11951REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g11952EXONUCLEASE, PHAGE-TYPE/RECB, C-TERMINAL DOMAIN-CONTAINING PROTEIN
Clavulariidae_g11953HAT FAMILY DIMERISATION DOMAINCONTAINING PROTEIN-RELATED
Clavulariidae_g11954
Clavulariidae_g11955REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g11956PROTEIN B, PUTATIVE-RELATED-RELATED
Clavulariidae_g11957UNCHARACTERIZED
Clavulariidae_g11958
Clavulariidae_g11959REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g1196
Clavulariidae_g11960EXPRESSED PROTEIN
Clavulariidae_g11961
Clavulariidae_g11962INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN
Clavulariidae_g11963
Clavulariidae_g11964TRANSPOSABLE ELEMENT TC3 TRANSPOSASE-LIKE PROTEIN
Clavulariidae_g11965
Clavulariidae_g11966
Clavulariidae_g11967
Clavulariidae_g11968
Clavulariidae_g11969
Clavulariidae_g1197
Clavulariidae_g11970
Clavulariidae_g11971RETROTRANSPOSON
Clavulariidae_g11972PHD-TYPE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g11973TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
Clavulariidae_g11974IP13529P
Clavulariidae_g11975SI:CH211-196P9.1-RELATED
Clavulariidae_g11976CXC DOMAIN-CONTAINING PROTEIN-RELATED
Clavulariidae_g11977CXC DOMAIN-CONTAINING PROTEIN-RELATED
Clavulariidae_g11978
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