About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent~1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70%35,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g12022CENTROMERE PROTEIN U
Clavulariidae_g12023
Clavulariidae_g12024UPSTREAM BINDING TRANSCRIPTION FACTOR
Clavulariidae_g12025HISTONE H2A
Clavulariidae_g12026
Clavulariidae_g12027EF-HAND CALCIUM-BINDING DOMAIN-CONTAINING PROTEIN 6-RELATED
Clavulariidae_g12028GAMMA-BUTYROBETAINE HYDROXYLASE-RELATED
Clavulariidae_g12029
Clavulariidae_g1203TRANSCRIPTION INITIATION FACTOR TFIID
Clavulariidae_g12030GAMMA-BUTYROBETAINE HYDROXYLASE-RELATED
Clavulariidae_g12031
Clavulariidae_g12032
Clavulariidae_g12033
Clavulariidae_g12034PROTEIN CBG23806
Clavulariidae_g12035LD33804P
Clavulariidae_g12036DUAL SPECIFICITY PROTEIN KINASE
Clavulariidae_g12037UNCHARACTERIZED
Clavulariidae_g12038RAS-RELATED PROTEIN RAB
Clavulariidae_g12039
Clavulariidae_g1204REVERSE TRANSCRIPTASES
Clavulariidae_g12040ATP-BINDING CASSETTE SUB-FAMILY B
Clavulariidae_g12041SIGNAL PEPTIDE PEPTIDASE
Clavulariidae_g12042PR DOMAIN ZINC FINGER PROTEIN
Clavulariidae_g12043WD REPEAT DOMAIN-RELATED
Clavulariidae_g12044MITOCHONDRIAL NICOTINAMIDE ADENINE DINUCLEOTIDE TRANSPORTER 1-RELATED-RELATED
Clavulariidae_g12045
Clavulariidae_g12046GLYCOPROTEIN HORMONE RECEPTOR
Clavulariidae_g12047
Clavulariidae_g12048
Clavulariidae_g12049EXPRESSED PROTEIN
Clavulariidae_g1205INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN
Clavulariidae_g12050
Clavulariidae_g12051-
Clavulariidae_g12052
Clavulariidae_g12053
Clavulariidae_g12054UNCHARACTERIZED
Clavulariidae_g12055TRANSLATION FACTOR
Clavulariidae_g12056DNA HELICASE RECQ FAMILY MEMBER
Clavulariidae_g12057
Clavulariidae_g12058
Clavulariidae_g12059UNCHARACTERIZED
Clavulariidae_g1206NADPH OXIDASE
Clavulariidae_g12060
Clavulariidae_g12061TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
Clavulariidae_g12062TRIHELIX TRANSCRIPTION FACTOR ASIL2
Clavulariidae_g12063ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g12064COLLAGEN ALPHA
Clavulariidae_g12065DNA HELICASE RECQ FAMILY MEMBER
Clavulariidae_g12066
Clavulariidae_g12067
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