About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides15807-
Paelopatides15808PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4
Paelopatides15809PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4
Paelopatides15810IG-LIKE DOMAIN-CONTAINING PROTEIN
Paelopatides15811DYNEIN HEAVY CHAIN 1, AXONEMAL-LIKE PROTEIN
Paelopatides15814HAT FAMILY DIMERISATION DOMAINCONTAINING PROTEIN-RELATED
Paelopatides15816-
Paelopatides15817PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4
Paelopatides15818-
Paelopatides15819REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides15820ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides15821DNA REPLICATION-RELATED ELEMENT FACTOR, ISOFORM A
Paelopatides15822-
Paelopatides15825VALYL-TRNA SYNTHETASES
Paelopatides15826FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides15827ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides15828PHOSPHATASE AND ACTIN REGULATOR PHACTR
Paelopatides15829PHOSPHATASE AND ACTIN REGULATOR PHACTR
Paelopatides15830REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides15831CHROMATIN COMPLEXES SUBUNIT BAP18-RELATED
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