About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides19877TRANSPOSON TY3-I GAG-POL POLYPROTEIN
Paelopatides19878REVERSE TRANSCRIPTASE
Paelopatides19879SI:CH211-108C17.2-RELATED-RELATED
Paelopatides19880TRYPSIN-RELATED
Paelopatides19881ENDONUCLEASE-RELATED
Paelopatides19883-
Paelopatides19884PARANEOPLASTIC ANTIGEN
Paelopatides19885-
Paelopatides19886PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides19887UNCHARACTERIZED
Paelopatides19888TRANSPOSON
Paelopatides19889UNCHARACTERIZED
Paelopatides19890UNCHARACTERIZED
Paelopatides19891PROTEIN CBG26694
Paelopatides19892UNCHARACTERIZED
Paelopatides19893PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides19894-
Paelopatides19895-
Paelopatides19896MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATED
Paelopatides19897CUB DOMAIN-CONTAINING PROTEIN
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