About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides43023RETROTRANSPOSON
Paelopatides43024-
Paelopatides43025ALPHA- 1,3 -FUCOSYLTRANSFERASE
Paelopatides43026SOLUTE CARRIER FAMILY 5
Paelopatides43027SOLUTE CARRIER FAMILY 5
Paelopatides43028IRON-SULFUR CLUSTER CO-CHAPERONE PROTEIN HSCB
Paelopatides43029-
Paelopatides43030-
Paelopatides43031ALPHA- 1,3 -FUCOSYLTRANSFERASE
Paelopatides430322-HACID_DH_C DOMAIN-CONTAINING PROTEIN
Paelopatides43033FYVE AND COILED-COIL DOMAIN-CONTAINING PROTEIN 1
Paelopatides43034-
Paelopatides43035-
Paelopatides43036FYVE AND COILED-COIL DOMAIN-CONTAINING PROTEIN 1
Paelopatides43037TALIN
Paelopatides43038TALIN
Paelopatides43039SUGAR KINASE
Paelopatides43040-
Paelopatides43041MITOCHONDRIAL 2-OXODICARBOXYLATE CARRIER 1-RELATED
Paelopatides43042-
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