About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides43067REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides43069PHD-TYPE DOMAIN-CONTAINING PROTEIN
Paelopatides43070-
Paelopatides43071-
Paelopatides43072PHD-TYPE DOMAIN-CONTAINING PROTEIN
Paelopatides43073NACHT DOMAIN-CONTAINING PROTEIN
Paelopatides43074-
Paelopatides43075SIMILAR TO HYPOTHETICAL PROTEIN FLJ20508
Paelopatides43076PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4
Paelopatides43077-
Paelopatides43078TRANSPOSON TY3-I GAG-POL POLYPROTEIN
Paelopatides43079ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides43080G-PROTEIN COUPLED RECEPTOR
Paelopatides43081NETRIN RECEPTOR UNC5
Paelopatides43082PROTEIN EURL HOMOLOG
Paelopatides43083SORTING NEXIN-4
Paelopatides43084ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides43085-
Paelopatides43086-
Paelopatides43087MATRIX METALLOPROTEINASE
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