About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides43043EF HAND DOMAIN FAMILY A1,A2-RELATED
Paelopatides43045BETA1,3-GALACTOSYLTRANSFERASE
Paelopatides43046CHONDROITIN SYNTHASE
Paelopatides43047-
Paelopatides43048-
Paelopatides43049ANOCTAMIN
Paelopatides43050N-HYDROXYARYLAMINE O-ACETYLTRANSFERASE
Paelopatides43051ANOCTAMIN
Paelopatides43052UNCHARACTERIZED
Paelopatides43053-
Paelopatides43054OPSIN
Paelopatides43055ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides43056CDC37-RELATED
Paelopatides43060SCAVENGER RECEPTOR CLASS B TYPE-1 SR-B1
Paelopatides43061DISCS LARGE
Paelopatides43062DNA REPAIR PROTEIN XRCC3
Paelopatides43063RAB3-GAP REGULATORY DOMAIN
Paelopatides43064REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides43065RAB3-GAP REGULATORY DOMAIN
Paelopatides43066INTEGRAL MEMBRANE PROTEIN GPR137
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