About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides43088MATRIX METALLOPROTEINASE
Paelopatides43089ZINC FINGER PROTEIN 200
Paelopatides43090PR DOMAIN ZINC FINGER PROTEIN
Paelopatides43091ODD-SKIPPED - RELATED
Paelopatides43092ZINC FINGER PROTEIN ZIC AND GLI
Paelopatides43093ZINC FINGER PROTEIN
Paelopatides43094ODD-SKIPPED - RELATED
Paelopatides43095ODD-SKIPPED - RELATED
Paelopatides43096ZINC FINGER AND SCAN DOMAIN-CONTAINING
Paelopatides43097-
Paelopatides43098DDB1- AND CUL4-ASSOCIATED FACTOR 17
Paelopatides43099E3 UBIQUITIN-PROTEIN LIGASE MIB2
Paelopatides43100TRANSMEMBRANE PROTEIN 229 FAMILY MEMBER
Paelopatides43101OPTIC ATROPHY 3 PROTEIN OPA3
Paelopatides43102-
Paelopatides43103-
Paelopatides43104-
Paelopatides43105-
Paelopatides43106PROTEIN CBG26694
Paelopatides43107PARANEOPLASTIC ANTIGEN
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