About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides43108PARANEOPLASTIC ANTIGEN
Paelopatides43109REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides43110-
Paelopatides43111-
Paelopatides43112RETROTRANSPOSON
Paelopatides43113PHD-TYPE DOMAIN-CONTAINING PROTEIN
Paelopatides43114ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides43115TUBULIN
Paelopatides43116SOLUTE CARRIER FAMILY 22 MEMBER
Paelopatides43117PREFOLDIN SUBUNIT 3
Paelopatides43118UNCHARACTERIZED
Paelopatides43119PROTEIN CBG26694
Paelopatides43120PROTEIN CBG26694
Paelopatides43121UNCHARACTERIZED
Paelopatides43122UNCHARACTERIZED
Paelopatides43123DIACYLGLYCEROL KINASE
Paelopatides43124MICROFIBRIL-ASSOCIATED GLYCOPROTEIN 3
Paelopatides43126REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides43127-
Paelopatides43128TRANSLATION ELONGATION FACTOR-RELATED
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