About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides43129CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides43130REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides43131-
Paelopatides43132-
Paelopatides43133ENDONUCLEASE-RELATED
Paelopatides43134POL PROTEIN
Paelopatides43135PARANEOPLASTIC ANTIGEN
Paelopatides43136BCL9
Paelopatides43137VINCULIN
Paelopatides43138ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides43139VINCULIN
Paelopatides43140-
Paelopatides43141-
Paelopatides43142-
Paelopatides43143TOUCAN, ISOFORM A
Paelopatides43144REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides43145-
Paelopatides43146-
Paelopatides43147ENDONUCLEASE-RELATED
Paelopatides43148ENZYMATIC POLYPROTEIN-RELATED
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