About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent~1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70%35,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g11212PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4
Clavulariidae_g11213
Clavulariidae_g11214TRANSPOSABLE ELEMENT-RELATED
Clavulariidae_g11215
Clavulariidae_g11216
Clavulariidae_g11217PROTEIN G1-LIKE2
Clavulariidae_g11218REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g11219
Clavulariidae_g1122TRANSPOSABLE ELEMENT-RELATED
Clavulariidae_g11220DDE_TNP_1_7 DOMAIN-CONTAINING PROTEIN
Clavulariidae_g11221
Clavulariidae_g11222
Clavulariidae_g11223
Clavulariidae_g11224UNCHARACTERIZED
Clavulariidae_g11225DNA POLYMERASE
Clavulariidae_g11226
Clavulariidae_g11227
Clavulariidae_g11228
Clavulariidae_g11229
Clavulariidae_g1123
Clavulariidae_g11230EXPRESSED PROTEIN
Clavulariidae_g11231
Clavulariidae_g11232DNA HELICASE RECQ FAMILY MEMBER
Clavulariidae_g11233REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g11234OTU DOMAIN CONTAINING PROTEIN
Clavulariidae_g11235UNCHARACTERIZED
Clavulariidae_g11236
Clavulariidae_g11237
Clavulariidae_g11238
Clavulariidae_g11239THAP DOMAIN PROTEIN
Clavulariidae_g1124THAP DOMAIN-CONTAINING PROTEIN 6
Clavulariidae_g11240CXC DOMAIN-CONTAINING PROTEIN-RELATED
Clavulariidae_g11241CXC DOMAIN-CONTAINING PROTEIN-RELATED
Clavulariidae_g11242ZGC:195170
Clavulariidae_g11243PX DOMAIN-CONTAINING PROTEIN
Clavulariidae_g11244REVERSE TRANSCRIPTASES
Clavulariidae_g11245RETROTRANSPOSON
Clavulariidae_g11246
Clavulariidae_g11247UNCHARACTERIZED
Clavulariidae_g11248MADF DOMAIN TRANSCRIPTION FACTOR
Clavulariidae_g11249REVERSE TRANSCRIPTASE
Clavulariidae_g1125KERATIN, ULTRA HIGH-SULFUR MATRIX PROTEIN-LIKE
Clavulariidae_g11250
Clavulariidae_g11251THAP DOMAIN-CONTAINING PROTEIN 6
Clavulariidae_g11252
Clavulariidae_g11253
Clavulariidae_g11254FLAP ENDONUCLEASE FAMILY MEMBER
Clavulariidae_g11255RAS-ASSOCIATING DOMAIN-CONTAINING PROTEIN
Clavulariidae_g11256RAS-ASSOCIATING DOMAIN-CONTAINING PROTEIN
Clavulariidae_g11257
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