About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent~1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70%35,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g11302CXC DOMAIN-CONTAINING PROTEIN-RELATED
Clavulariidae_g11303
Clavulariidae_g11304REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g11305TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
Clavulariidae_g11306PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4
Clavulariidae_g11307EUKARYOTIC ELONGATION FACTOR 2 KINASE-RELATED
Clavulariidae_g11308EXPRESSED PROTEIN
Clavulariidae_g11309
Clavulariidae_g1131
Clavulariidae_g11310
Clavulariidae_g11311PROTEIN CBG23764
Clavulariidae_g11312
Clavulariidae_g11313
Clavulariidae_g11314
Clavulariidae_g11315
Clavulariidae_g11316REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g11317PROTEIN, PUTATIVE-RELATED
Clavulariidae_g11318PROTEIN CBG23764
Clavulariidae_g11319
Clavulariidae_g1132REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g11320
Clavulariidae_g11321ZGC:195170
Clavulariidae_g11322
Clavulariidae_g11323-
Clavulariidae_g11324TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
Clavulariidae_g11325TRANSPOSASE
Clavulariidae_g11326
Clavulariidae_g11327
Clavulariidae_g11328ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 60
Clavulariidae_g11329DNA HELICASE RECQ FAMILY MEMBER
Clavulariidae_g1133
Clavulariidae_g11330
Clavulariidae_g11331
Clavulariidae_g11332
Clavulariidae_g11333
Clavulariidae_g11334CXC DOMAIN-CONTAINING PROTEIN-RELATED
Clavulariidae_g11335CXC DOMAIN-CONTAINING PROTEIN-RELATED
Clavulariidae_g11336DDE_TNP_1_7 DOMAIN-CONTAINING PROTEIN
Clavulariidae_g11337EXPRESSED PROTEIN
Clavulariidae_g11338
Clavulariidae_g11339
Clavulariidae_g1134C2H2-TYPE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g11340C2H2-TYPE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g11341HMG DOMAIN-CONTAINING PROTEIN 3
Clavulariidae_g11342UNCHARACTERIZED
Clavulariidae_g11343ZINC FINGER CCHC DOMAIN-CONTAINING PROTEIN 7
Clavulariidae_g11344
Clavulariidae_g11345ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g11346FLAP ENDONUCLEASE FAMILY MEMBER
Clavulariidae_g11347
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