About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent~1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70%35,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g11258
Clavulariidae_g11259
Clavulariidae_g1126TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
Clavulariidae_g11260
Clavulariidae_g11261
Clavulariidae_g11262
Clavulariidae_g11263ATP-DEPENDENT DNA HELICASE
Clavulariidae_g11264
Clavulariidae_g11265PROTEIN CBG26694
Clavulariidae_g11266
Clavulariidae_g11267REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g11268REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g11269
Clavulariidae_g1127REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g11270ATP-DEPENDENT DNA HELICASE
Clavulariidae_g11271
Clavulariidae_g11272TRANSPOSABLE ELEMENT TC3 TRANSPOSASE-LIKE PROTEIN
Clavulariidae_g11273EXPRESSED PROTEIN
Clavulariidae_g11274THAP DOMAIN-CONTAINING PROTEIN 6
Clavulariidae_g11275-
Clavulariidae_g11276
Clavulariidae_g11277
Clavulariidae_g11278
Clavulariidae_g11279
Clavulariidae_g1128
Clavulariidae_g11280
Clavulariidae_g11281EXPRESSED PROTEIN
Clavulariidae_g11282UNCHARACTERIZED
Clavulariidae_g11283DNA HELICASE RECQ FAMILY MEMBER
Clavulariidae_g11284
Clavulariidae_g11285UNCHARACTERIZED
Clavulariidae_g11286
Clavulariidae_g11287
Clavulariidae_g11288
Clavulariidae_g11289F5/8 TYPE C DOMAIN-CONTAINING PROTEIN-RELATED
Clavulariidae_g1129
Clavulariidae_g11290BEN DOMAIN-CONTAINING PROTEIN 6
Clavulariidae_g11291
Clavulariidae_g11292NON-LTR RETROLELEMENT REVERSE TRANSCRIPTASE-LIKE PROTEIN-RELATED
Clavulariidae_g11293
Clavulariidae_g11294
Clavulariidae_g11295
Clavulariidae_g11296DDE_TNP_1_7 DOMAIN-CONTAINING PROTEIN
Clavulariidae_g11297
Clavulariidae_g11298
Clavulariidae_g11299
Clavulariidae_g113PENTRAXIN
Clavulariidae_g1130ATP-DEPENDENT DNA HELICASE
Clavulariidae_g11300INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN
Clavulariidae_g11301
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