About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent~1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70%35,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g11393
Clavulariidae_g11394
Clavulariidae_g11395HAT FAMILY DIMERISATION DOMAINCONTAINING PROTEIN-RELATED
Clavulariidae_g11396
Clavulariidae_g11397EXPRESSED PROTEIN
Clavulariidae_g11398
Clavulariidae_g11399
Clavulariidae_g114CYTOCHROME B561 AND DOMON DOMAIN-CONTAINING PROTEIN
Clavulariidae_g1140
Clavulariidae_g11400TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
Clavulariidae_g11401SI:CH211-108C17.2-RELATED-RELATED
Clavulariidae_g11402ZGC:195170
Clavulariidae_g11403
Clavulariidae_g11404
Clavulariidae_g11405
Clavulariidae_g11406
Clavulariidae_g11407TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
Clavulariidae_g11408
Clavulariidae_g11409REVERSE TRANSCRIPTASES
Clavulariidae_g1141PROTEIN CBG26694
Clavulariidae_g11410
Clavulariidae_g11411
Clavulariidae_g11412
Clavulariidae_g11413
Clavulariidae_g11414
Clavulariidae_g11415
Clavulariidae_g11416HAT FAMILY DIMERISATION DOMAINCONTAINING PROTEIN-RELATED
Clavulariidae_g11417C2H2-TYPE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g11418C2H2-TYPE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g11419C2H2-TYPE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g1142PROTEIN CBG26694
Clavulariidae_g11420
Clavulariidae_g11421THAP DOMAIN-CONTAINING PROTEIN 2
Clavulariidae_g11422ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g11423
Clavulariidae_g11424PHAGE INTEGRASE-RELATED
Clavulariidae_g11425TRANSPOSASE
Clavulariidae_g11426
Clavulariidae_g11427
Clavulariidae_g11428SI:CH211-196P9.1-RELATED
Clavulariidae_g11429IP13529P
Clavulariidae_g1143ANK_REP_REGION DOMAIN-CONTAINING PROTEIN-RELATED
Clavulariidae_g11430DDE_TNP_1_7 DOMAIN-CONTAINING PROTEIN
Clavulariidae_g11431
Clavulariidae_g11432RAS-ASSOCIATING DOMAIN-CONTAINING PROTEIN
Clavulariidae_g11433PROTEIN CBG26694
Clavulariidae_g11434REVERSE TRANSCRIPTASES
Clavulariidae_g11435UNCHARACTERIZED
Clavulariidae_g11436ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g11437
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