About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent~1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70%35,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g11438BIFUNCTIONAL TH2 PROTEIN
Clavulariidae_g11439INTEGRASE CORE DOMAIN CONTAINING PROTEIN
Clavulariidae_g1144REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g11440BIFUNCTIONAL TH2 PROTEIN
Clavulariidae_g11441PROTEIN CBG26694
Clavulariidae_g11442
Clavulariidae_g11443PROTEIN CBG26694
Clavulariidae_g11444ANK_REP_REGION DOMAIN-CONTAINING PROTEIN-RELATED
Clavulariidae_g11445REVERSE TRANSCRIPTASE
Clavulariidae_g11446
Clavulariidae_g11447ALPHA- 1,6 -FUCOSYLTRANSFERASE
Clavulariidae_g11448CXC DOMAIN-CONTAINING PROTEIN-RELATED
Clavulariidae_g11449CXC DOMAIN-CONTAINING PROTEIN-RELATED
Clavulariidae_g1145C2H2-TYPE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g11450CXC DOMAIN-CONTAINING PROTEIN-RELATED
Clavulariidae_g11451CXC DOMAIN-CONTAINING PROTEIN-RELATED
Clavulariidae_g11452CXC DOMAIN-CONTAINING PROTEIN-RELATED
Clavulariidae_g11453EXPRESSED PROTEIN
Clavulariidae_g11454
Clavulariidae_g11455CXC DOMAIN-CONTAINING PROTEIN-RELATED
Clavulariidae_g11456CXC DOMAIN-CONTAINING PROTEIN-RELATED
Clavulariidae_g11457CXC DOMAIN-CONTAINING PROTEIN-RELATED
Clavulariidae_g11458CXC DOMAIN-CONTAINING PROTEIN-RELATED
Clavulariidae_g11459
Clavulariidae_g1146GENERAL TRANSCRIPTION FACTOR 2-RELATED ZINC FINGER PROTEIN
Clavulariidae_g11460
Clavulariidae_g11461
Clavulariidae_g11462
Clavulariidae_g11463IP13529P
Clavulariidae_g11464RETROTRANSPOSON
Clavulariidae_g11465DNA HELICASE RECQ FAMILY MEMBER
Clavulariidae_g11466
Clavulariidae_g11467NF-KAPPA-B INHIBITOR ALPHA
Clavulariidae_g11468
Clavulariidae_g11469
Clavulariidae_g1147RETROTRANSPOSON
Clavulariidae_g11470
Clavulariidae_g11471
Clavulariidae_g11472REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g11473ZGC:195170
Clavulariidae_g11474ATP-DEPENDENT DNA HELICASE
Clavulariidae_g11475
Clavulariidae_g11476OTU DOMAIN CONTAINING PROTEIN
Clavulariidae_g11477THAP DOMAIN PROTEIN
Clavulariidae_g11478
Clavulariidae_g11479
Clavulariidae_g1148THAP DOMAIN PROTEIN
Clavulariidae_g11480ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g11481
Clavulariidae_g11482THAP DOMAIN-CONTAINING PROTEIN 9
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