Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Trachythela sp. YZ-2020 | Cnidaria | Trachythela sp., Cold-water corals (CWCs) | Cold seep/Hydrothermal vent | ~1068 | slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS) | 2770514 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
IDSSE_Tra_sp_1.0 | 578.2Mb | Contig | 2020 | JADLSH01 | Institute of Deep-Sea Science and Engineering,Chinese Academy of Sciences | PRJNA661975 | 90.70% | 35,305 |
Title | Journal | Pubmed ID |
---|---|---|
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae) | Genome Biology and Evolution | 33331875 |
Gene ID | Description |
---|---|
Clavulariidae_g11438 | BIFUNCTIONAL TH2 PROTEIN |
Clavulariidae_g11439 | INTEGRASE CORE DOMAIN CONTAINING PROTEIN |
Clavulariidae_g1144 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g11440 | BIFUNCTIONAL TH2 PROTEIN |
Clavulariidae_g11441 | PROTEIN CBG26694 |
Clavulariidae_g11442 | |
Clavulariidae_g11443 | PROTEIN CBG26694 |
Clavulariidae_g11444 | ANK_REP_REGION DOMAIN-CONTAINING PROTEIN-RELATED |
Clavulariidae_g11445 | REVERSE TRANSCRIPTASE |
Clavulariidae_g11446 | |
Clavulariidae_g11447 | ALPHA- 1,6 -FUCOSYLTRANSFERASE |
Clavulariidae_g11448 | CXC DOMAIN-CONTAINING PROTEIN-RELATED |
Clavulariidae_g11449 | CXC DOMAIN-CONTAINING PROTEIN-RELATED |
Clavulariidae_g1145 | C2H2-TYPE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g11450 | CXC DOMAIN-CONTAINING PROTEIN-RELATED |
Clavulariidae_g11451 | CXC DOMAIN-CONTAINING PROTEIN-RELATED |
Clavulariidae_g11452 | CXC DOMAIN-CONTAINING PROTEIN-RELATED |
Clavulariidae_g11453 | EXPRESSED PROTEIN |
Clavulariidae_g11454 | |
Clavulariidae_g11455 | CXC DOMAIN-CONTAINING PROTEIN-RELATED |
Clavulariidae_g11456 | CXC DOMAIN-CONTAINING PROTEIN-RELATED |
Clavulariidae_g11457 | CXC DOMAIN-CONTAINING PROTEIN-RELATED |
Clavulariidae_g11458 | CXC DOMAIN-CONTAINING PROTEIN-RELATED |
Clavulariidae_g11459 | |
Clavulariidae_g1146 | GENERAL TRANSCRIPTION FACTOR 2-RELATED ZINC FINGER PROTEIN |
Clavulariidae_g11460 | |
Clavulariidae_g11461 | |
Clavulariidae_g11462 | |
Clavulariidae_g11463 | IP13529P |
Clavulariidae_g11464 | RETROTRANSPOSON |
Clavulariidae_g11465 | DNA HELICASE RECQ FAMILY MEMBER |
Clavulariidae_g11466 | |
Clavulariidae_g11467 | NF-KAPPA-B INHIBITOR ALPHA |
Clavulariidae_g11468 | |
Clavulariidae_g11469 | |
Clavulariidae_g1147 | RETROTRANSPOSON |
Clavulariidae_g11470 | |
Clavulariidae_g11471 | |
Clavulariidae_g11472 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g11473 | ZGC:195170 |
Clavulariidae_g11474 | ATP-DEPENDENT DNA HELICASE |
Clavulariidae_g11475 | |
Clavulariidae_g11476 | OTU DOMAIN CONTAINING PROTEIN |
Clavulariidae_g11477 | THAP DOMAIN PROTEIN |
Clavulariidae_g11478 | |
Clavulariidae_g11479 | |
Clavulariidae_g1148 | THAP DOMAIN PROTEIN |
Clavulariidae_g11480 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g11481 | |
Clavulariidae_g11482 | THAP DOMAIN-CONTAINING PROTEIN 9 |