About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent~1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70%35,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g11483
Clavulariidae_g11484ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g11485REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g11486
Clavulariidae_g11487RAPSYN-RELATED
Clavulariidae_g11488REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g11489RETROTRANSPOSON
Clavulariidae_g1149
Clavulariidae_g11490RAPSYN-RELATED
Clavulariidae_g11491RETINOL DEHYDROGENASE-RELATED
Clavulariidae_g11492PROTEIN, PUTATIVE-RELATED
Clavulariidae_g11493RETINOL DEHYDROGENASE-RELATED
Clavulariidae_g11494
Clavulariidae_g11495EXPRESSED PROTEIN
Clavulariidae_g11496
Clavulariidae_g11497
Clavulariidae_g11498HYDRANTOINASE/DIHYDROPYRIMIDINASE FAMILY MEMBER
Clavulariidae_g11499ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g115
Clavulariidae_g1150
Clavulariidae_g11500REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g11501ENDONUCLEASE-RELATED
Clavulariidae_g11502OS10G0105400 PROTEIN
Clavulariidae_g11503OS10G0105400 PROTEIN
Clavulariidae_g11504REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g11505PROTEIN CBG26694
Clavulariidae_g11506LDOC1 RELATED
Clavulariidae_g11507REVERSE TRANSCRIPTASE
Clavulariidae_g11508
Clavulariidae_g11509PX DOMAIN-CONTAINING PROTEIN
Clavulariidae_g1151
Clavulariidae_g11510PROPERDIN
Clavulariidae_g11511PROPERDIN
Clavulariidae_g11512
Clavulariidae_g11513
Clavulariidae_g11514
Clavulariidae_g11515
Clavulariidae_g11516COLLAGEN ALPHA
Clavulariidae_g11517
Clavulariidae_g11518
Clavulariidae_g11519PROTEIN CBG23764
Clavulariidae_g1152
Clavulariidae_g11520EXONUCLEASE, PHAGE-TYPE/RECB, C-TERMINAL DOMAIN-CONTAINING PROTEIN
Clavulariidae_g11521
Clavulariidae_g11522TYROSINE-PROTEIN KINASE
Clavulariidae_g11523SI:CH211-196P9.1-RELATED
Clavulariidae_g11524
Clavulariidae_g11525IP13529P
Clavulariidae_g11526REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g11527UNCHARACTERIZED
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