Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Trachythela sp. YZ-2020 | Cnidaria | Trachythela sp., Cold-water corals (CWCs) | Cold seep/Hydrothermal vent | ~1068 | slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS) | 2770514 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
IDSSE_Tra_sp_1.0 | 578.2Mb | Contig | 2020 | JADLSH01 | Institute of Deep-Sea Science and Engineering,Chinese Academy of Sciences | PRJNA661975 | 90.70% | 35,305 |
Title | Journal | Pubmed ID |
---|---|---|
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae) | Genome Biology and Evolution | 33331875 |
Gene ID | Description |
---|---|
Clavulariidae_g11528 | |
Clavulariidae_g11529 | DNA HELICASE RECQ FAMILY MEMBER |
Clavulariidae_g1153 | |
Clavulariidae_g11530 | |
Clavulariidae_g11531 | AG-1 BLOOD STAGE MEMBRANE PROTEIN HOMOLOGUE |
Clavulariidae_g11532 | PHD-TYPE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g11533 | RETROTRANSPOSON |
Clavulariidae_g11534 | |
Clavulariidae_g11535 | EXPRESSED PROTEIN |
Clavulariidae_g11536 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN-RELATED |
Clavulariidae_g11537 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN-RELATED |
Clavulariidae_g11538 | |
Clavulariidae_g11539 | |
Clavulariidae_g1154 | DNA HELICASE RECQ FAMILY MEMBER |
Clavulariidae_g11540 | |
Clavulariidae_g11541 | THAP DOMAIN-CONTAINING |
Clavulariidae_g11542 | EXPRESSED PROTEIN |
Clavulariidae_g11543 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g11544 | UNCHARACTERIZED |
Clavulariidae_g11545 | CXC DOMAIN-CONTAINING PROTEIN-RELATED |
Clavulariidae_g11546 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g11547 | TRANSCRIPTASE, PUTATIVE-RELATED-RELATED |
Clavulariidae_g11548 | ENDONUCLEASE-RELATED |
Clavulariidae_g11549 | UNCHARACTERIZED |
Clavulariidae_g1155 | PX DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g11550 | ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 12 |
Clavulariidae_g11551 | |
Clavulariidae_g11552 | CYTOSINE-SPECIFIC METHYLTRANSFERASE |
Clavulariidae_g11553 | REVERSE TRANSCRIPTASES |
Clavulariidae_g11554 | EXPRESSED PROTEIN |
Clavulariidae_g11555 | HECT DOMAIN UBIQUITIN-PROTEIN LIGASE |
Clavulariidae_g11556 | SI:CH211-108C17.2-RELATED-RELATED |
Clavulariidae_g11557 | PROTEIN CBG26694 |
Clavulariidae_g11558 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g11559 | 52 KDA REPRESSOR OF THE INHIBITOR OF THE PROTEIN KINASE-LIKE PROTEIN-RELATED |
Clavulariidae_g1156 | EXPRESSED PROTEIN |
Clavulariidae_g11560 | EXPRESSED PROTEIN |
Clavulariidae_g11561 | |
Clavulariidae_g11562 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g11563 | RETROTRANSPOSON |
Clavulariidae_g11564 | |
Clavulariidae_g11565 | |
Clavulariidae_g11566 | |
Clavulariidae_g11567 | DNA HELICASE RECQ FAMILY MEMBER |
Clavulariidae_g11568 | |
Clavulariidae_g11569 | |
Clavulariidae_g1157 | |
Clavulariidae_g11570 | - |
Clavulariidae_g11571 | RETROTRANSPOSON |
Clavulariidae_g11572 | INTEGRASE CORE DOMAIN CONTAINING PROTEIN |