About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent~1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70%35,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g11528
Clavulariidae_g11529DNA HELICASE RECQ FAMILY MEMBER
Clavulariidae_g1153
Clavulariidae_g11530
Clavulariidae_g11531AG-1 BLOOD STAGE MEMBRANE PROTEIN HOMOLOGUE
Clavulariidae_g11532PHD-TYPE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g11533RETROTRANSPOSON
Clavulariidae_g11534
Clavulariidae_g11535EXPRESSED PROTEIN
Clavulariidae_g11536ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN-RELATED
Clavulariidae_g11537ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN-RELATED
Clavulariidae_g11538
Clavulariidae_g11539
Clavulariidae_g1154DNA HELICASE RECQ FAMILY MEMBER
Clavulariidae_g11540
Clavulariidae_g11541THAP DOMAIN-CONTAINING
Clavulariidae_g11542EXPRESSED PROTEIN
Clavulariidae_g11543ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g11544UNCHARACTERIZED
Clavulariidae_g11545CXC DOMAIN-CONTAINING PROTEIN-RELATED
Clavulariidae_g11546ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g11547TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
Clavulariidae_g11548ENDONUCLEASE-RELATED
Clavulariidae_g11549UNCHARACTERIZED
Clavulariidae_g1155PX DOMAIN-CONTAINING PROTEIN
Clavulariidae_g11550ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 12
Clavulariidae_g11551
Clavulariidae_g11552CYTOSINE-SPECIFIC METHYLTRANSFERASE
Clavulariidae_g11553REVERSE TRANSCRIPTASES
Clavulariidae_g11554EXPRESSED PROTEIN
Clavulariidae_g11555HECT DOMAIN UBIQUITIN-PROTEIN LIGASE
Clavulariidae_g11556SI:CH211-108C17.2-RELATED-RELATED
Clavulariidae_g11557PROTEIN CBG26694
Clavulariidae_g11558REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g1155952 KDA REPRESSOR OF THE INHIBITOR OF THE PROTEIN KINASE-LIKE PROTEIN-RELATED
Clavulariidae_g1156EXPRESSED PROTEIN
Clavulariidae_g11560EXPRESSED PROTEIN
Clavulariidae_g11561
Clavulariidae_g11562REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g11563RETROTRANSPOSON
Clavulariidae_g11564
Clavulariidae_g11565
Clavulariidae_g11566
Clavulariidae_g11567DNA HELICASE RECQ FAMILY MEMBER
Clavulariidae_g11568
Clavulariidae_g11569
Clavulariidae_g1157
Clavulariidae_g11570-
Clavulariidae_g11571RETROTRANSPOSON
Clavulariidae_g11572INTEGRASE CORE DOMAIN CONTAINING PROTEIN
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