About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent~1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70%35,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g11753
Clavulariidae_g11754SI:CH211-108C17.2-RELATED-RELATED
Clavulariidae_g11755ZGC:195170
Clavulariidae_g11756DNA HELICASE RECQ FAMILY MEMBER
Clavulariidae_g11757REVERSE TRANSCRIPTASE
Clavulariidae_g11758L1 TRANSPOSABLE ELEMENT-RELATED
Clavulariidae_g11759
Clavulariidae_g1176
Clavulariidae_g11760
Clavulariidae_g11761UBIQUITIN CARBOXYL-TERMINAL HYDROLASE
Clavulariidae_g11762
Clavulariidae_g11763
Clavulariidae_g11764DNA HELICASE RECQ FAMILY MEMBER
Clavulariidae_g11765PHD-TYPE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g11766C2H2-TYPE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g11767C2H2-TYPE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g11768RETROTRANSPOSON
Clavulariidae_g11769RETROTRANSPOSON
Clavulariidae_g1177PROTEIN CBG26694
Clavulariidae_g11770
Clavulariidae_g11771
Clavulariidae_g11772
Clavulariidae_g11773CXC DOMAIN-CONTAINING PROTEIN-RELATED
Clavulariidae_g11774
Clavulariidae_g11775PROTEIN CBG26694
Clavulariidae_g11776EXONUCLEASE, PHAGE-TYPE/RECB, C-TERMINAL DOMAIN-CONTAINING PROTEIN
Clavulariidae_g11777
Clavulariidae_g11778
Clavulariidae_g11779
Clavulariidae_g1178PROTEIN CBG26694
Clavulariidae_g11780
Clavulariidae_g11781HAT FAMILY DIMERISATION DOMAINCONTAINING PROTEIN-RELATED
Clavulariidae_g11782L1 TRANSPOSABLE ELEMENT-RELATED
Clavulariidae_g11783ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g11784
Clavulariidae_g11785DNA POLYMERASE
Clavulariidae_g11786
Clavulariidae_g11787
Clavulariidae_g11788
Clavulariidae_g11789HAT FAMILY DIMERISATION DOMAINCONTAINING PROTEIN-RELATED
Clavulariidae_g1179PX DOMAIN-CONTAINING PROTEIN
Clavulariidae_g11790RAS-ASSOCIATING DOMAIN-CONTAINING PROTEIN
Clavulariidae_g11791ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g11792-
Clavulariidae_g1179352 KDA REPRESSOR OF THE INHIBITOR OF THE PROTEIN KINASE-LIKE PROTEIN-RELATED
Clavulariidae_g11794
Clavulariidae_g11795
Clavulariidae_g11796INTEGRASE CORE DOMAIN CONTAINING PROTEIN
Clavulariidae_g11797PROTEIN CBG23764
Clavulariidae_g11798PROTEIN CBG23764
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