About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent~1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70%35,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g11573
Clavulariidae_g11574
Clavulariidae_g11575
Clavulariidae_g11576RETROTRANSPOSON
Clavulariidae_g11577
Clavulariidae_g11578IP13529P
Clavulariidae_g11579
Clavulariidae_g1158RETROTRANSPOSON
Clavulariidae_g11580DNA HELICASE RECQ FAMILY MEMBER
Clavulariidae_g11581
Clavulariidae_g11582REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g11583
Clavulariidae_g11584RETROTRANSPOSON
Clavulariidae_g11585
Clavulariidae_g11586
Clavulariidae_g11587HAT FAMILY DIMERISATION DOMAINCONTAINING PROTEIN-RELATED
Clavulariidae_g11588
Clavulariidae_g11589EXPRESSED PROTEIN
Clavulariidae_g1159RETROTRANSPOSON
Clavulariidae_g11590HAT FAMILY DIMERISATION DOMAINCONTAINING PROTEIN-RELATED
Clavulariidae_g11591PHD-TYPE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g11592
Clavulariidae_g11593
Clavulariidae_g11594
Clavulariidae_g11595
Clavulariidae_g11596THAP DOMAIN PROTEIN
Clavulariidae_g11597RETROTRANSPOSON
Clavulariidae_g11598PHD-TYPE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g11599
Clavulariidae_g116INTEGRAL MEMBRANE PROTEIN GPR177
Clavulariidae_g1160
Clavulariidae_g11600RETROTRANSPOSON
Clavulariidae_g11601
Clavulariidae_g11602
Clavulariidae_g11603
Clavulariidae_g1160452 KDA REPRESSOR OF THE INHIBITOR OF THE PROTEIN KINASE-LIKE PROTEIN-RELATED
Clavulariidae_g11605DNA HELICASE RECQ FAMILY MEMBER
Clavulariidae_g11606
Clavulariidae_g11607
Clavulariidae_g11608
Clavulariidae_g11609DNA HELICASE RECQ FAMILY MEMBER
Clavulariidae_g1161
Clavulariidae_g11610TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
Clavulariidae_g11611REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g11612
Clavulariidae_g11613
Clavulariidae_g11614
Clavulariidae_g11615UBIQUITIN CARBOXYL-TERMINAL HYDROLASE
Clavulariidae_g11616C2H2-TYPE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g11617PROTEIN CBG26694
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