About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent~1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70%35,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g11618
Clavulariidae_g11619
Clavulariidae_g1162ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN-RELATED
Clavulariidae_g11620SI:CH211-108C17.2-RELATED-RELATED
Clavulariidae_g11621
Clavulariidae_g11622
Clavulariidae_g11623UNCHARACTERIZED
Clavulariidae_g11624
Clavulariidae_g11625FI21293P1
Clavulariidae_g11626
Clavulariidae_g11627TRANSPOSABLE ELEMENT-RELATED
Clavulariidae_g11628ZGC:195170
Clavulariidae_g11629TRANSPOSASE
Clavulariidae_g1163L1 TRANSPOSABLE ELEMENT-RELATED
Clavulariidae_g11630
Clavulariidae_g11631
Clavulariidae_g11632
Clavulariidae_g11633PROTEIN CBG26694
Clavulariidae_g11634REVERSE TRANSCRIPTASES
Clavulariidae_g11635PROTEIN CBG26694
Clavulariidae_g11636ENDONUCLEASE-RELATED
Clavulariidae_g11637PROTEIN CBG26694
Clavulariidae_g11638UNCHARACTERIZED
Clavulariidae_g11639HTH CENPB-TYPE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g1164
Clavulariidae_g11640
Clavulariidae_g11641
Clavulariidae_g11642
Clavulariidae_g11643REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g11644SI:CH211-108C17.2-RELATED-RELATED
Clavulariidae_g11645
Clavulariidae_g11646ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g11647REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g11648ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g11649
Clavulariidae_g1165TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
Clavulariidae_g11650PROTEIN CBG23764
Clavulariidae_g11651PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g11652CXC DOMAIN-CONTAINING PROTEIN-RELATED
Clavulariidae_g11653DNA HELICASE RECQ FAMILY MEMBER
Clavulariidae_g11654
Clavulariidae_g11655
Clavulariidae_g11656PHD-TYPE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g11657ZGC:195170
Clavulariidae_g11658SI:CH211-108C17.2-RELATED-RELATED
Clavulariidae_g11659UNCHARACTERIZED
Clavulariidae_g1166
Clavulariidae_g11660RAS-ASSOCIATING DOMAIN-CONTAINING PROTEIN
Clavulariidae_g11661RAS-ASSOCIATING DOMAIN-CONTAINING PROTEIN
Clavulariidae_g11662RETROTRANSPOSON
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