About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent~1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70%35,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g11663TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
Clavulariidae_g11664DNA HELICASE RECQ FAMILY MEMBER
Clavulariidae_g11665
Clavulariidae_g11666ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g11667REVERSE TRANSCRIPTASES
Clavulariidae_g11668REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g11669NON-LTR RETROLELEMENT REVERSE TRANSCRIPTASE-LIKE PROTEIN-RELATED
Clavulariidae_g1167
Clavulariidae_g11670
Clavulariidae_g11671
Clavulariidae_g11672
Clavulariidae_g11673DNA HELICASE RECQ FAMILY MEMBER
Clavulariidae_g11674
Clavulariidae_g11675
Clavulariidae_g11676REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g11677FLAP ENDONUCLEASE FAMILY MEMBER
Clavulariidae_g11678
Clavulariidae_g11679
Clavulariidae_g1168
Clavulariidae_g11680
Clavulariidae_g11681
Clavulariidae_g11682
Clavulariidae_g11683TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
Clavulariidae_g11684REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g11685
Clavulariidae_g11686
Clavulariidae_g11687
Clavulariidae_g11688SI:CH211-108C17.2-RELATED-RELATED
Clavulariidae_g11689-
Clavulariidae_g1169
Clavulariidae_g11690PROTEIN CBG26694
Clavulariidae_g11691RETROTRANSPOSON
Clavulariidae_g11692HAT FAMILY DIMERISATION DOMAINCONTAINING PROTEIN-RELATED
Clavulariidae_g11693REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g11694PROTEIN CBG26694
Clavulariidae_g11695EXPRESSED PROTEIN
Clavulariidae_g11696
Clavulariidae_g11697
Clavulariidae_g11698PROTEIN CBG26694
Clavulariidae_g11699
Clavulariidae_g117TUFTELIN-INTERACTING PROTEIN 11-RELATED
Clavulariidae_g1170
Clavulariidae_g11700
Clavulariidae_g11701CXC DOMAIN-CONTAINING PROTEIN-RELATED
Clavulariidae_g11702CXC DOMAIN-CONTAINING PROTEIN-RELATED
Clavulariidae_g11703
Clavulariidae_g11704
Clavulariidae_g11705
Clavulariidae_g11706ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g11707
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