About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent~1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70%35,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g11708REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g11709C2H2-TYPE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g1171REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g11710
Clavulariidae_g11711OSJNBA0013A04.12 PROTEIN
Clavulariidae_g11712HAT FAMILY DIMERISATION DOMAINCONTAINING PROTEIN-RELATED
Clavulariidae_g11713SI:CH211-108C17.2-RELATED-RELATED
Clavulariidae_g11714
Clavulariidae_g11715PROTEIN CBG26694
Clavulariidae_g11716
Clavulariidae_g11717
Clavulariidae_g11718
Clavulariidae_g11719
Clavulariidae_g1172ATP-DEPENDENT DNA HELICASE
Clavulariidae_g11720
Clavulariidae_g11721HMG DOMAIN-CONTAINING PROTEIN 3
Clavulariidae_g11722
Clavulariidae_g11723RAS-ASSOCIATING DOMAIN-CONTAINING PROTEIN
Clavulariidae_g11724PROTEIN CBG26694
Clavulariidae_g11725
Clavulariidae_g11726
Clavulariidae_g11727RETROTRANSPOSON
Clavulariidae_g11728THAP DOMAIN-CONTAINING PROTEIN 9
Clavulariidae_g11729
Clavulariidae_g1173ATP-DEPENDENT DNA HELICASE
Clavulariidae_g11730RETROTRANSPOSON
Clavulariidae_g11731PROTEIN CBG26694
Clavulariidae_g11732TYROSINE-PROTEIN KINASE
Clavulariidae_g11733
Clavulariidae_g11734RETROTRANSPOSON
Clavulariidae_g11735PROTEIN CBG26694
Clavulariidae_g11736
Clavulariidae_g11737UNCHARACTERIZED
Clavulariidae_g11738ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g11739REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g1174PHD-TYPE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g11740EXPRESSED PROTEIN
Clavulariidae_g11741
Clavulariidae_g11742
Clavulariidae_g11743
Clavulariidae_g11744
Clavulariidae_g11745
Clavulariidae_g11746UNCHARACTERIZED
Clavulariidae_g11747
Clavulariidae_g11748SI:CH211-108C17.2-RELATED-RELATED
Clavulariidae_g11749
Clavulariidae_g1175
Clavulariidae_g11750
Clavulariidae_g11751L1 TRANSPOSABLE ELEMENT-RELATED
Clavulariidae_g11752
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